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Cooperative Aldehyde Chemistry Maps an Orthogonal Lysine Reactivity Landscape

2026/04/02 by Ana Villalobos Galindo, Pinki Sihag, John M. Talbott +1 · 1 voice
Biochemistry, Genetics and Molecular Biology · Chemistry · #Asymmetric Hydrogenation and Catalysis #Catalytic Cross-Coupling Reactions #Chemical Synthesis and Analysis

paper · pdf · doi:10.1021/jacs.6c01030

openalex publication_date 2026/04/02 · openalex created_date 2026/04/03 · openalex updated_date 2026/07/19

Abstract

Reactive aldehyde metabolites are commonly viewed as drivers of nonspecific protein damage and stochastic cross-linking. Here, we show that cooperative aldehyde chemistry can generate multicomponent, mass-consistent electrophilic intermediates in water with strong lysine bias and site selectivity. Specifically, malondialdehyde (MDA) couples with monoaldehydes (e.g., acetaldehyde and benzaldehyde) to form a cooperative intermediate that channels reactivity toward lysine, yielding chemically stable dihydropyridine (DHP) adducts under aqueous conditions. Across peptides, purified proteins, and complex lysates, this pathway produces nonrandom, lysine-selective labeling. Comparison with NHS-ester chemoproteomic data sets suggests a distinct selectivity regime: whereas NHS acylation broadly tracks nucleophile accessibility with weak context dependence, cooperative MDA-monoaldehyde chemistry preferentially labels lysines in acidic microenvironments, consistent with an electrostatically influenced association-and-capture model that promotes productive cyclization to stable DHP adducts. Finally, electronic tuning of the DHP scaffold affords red-shifted emission compatible with live-cell imaging. Together, these results establish a tunable cooperative aldehyde platform that expands selective lysine bioconjugation chemistry and enables proteome-scale mapping of lysine microenvironment reactivity not captured by conventional acylating reagents.

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