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SARS-CoV-2 brainstem encephalitis in human inherited DBR1 deficiency

2024/07/18 by Yi‐Hao Chan, Vanja Lundberg, Jérémie Le Pen +96 · 1 voice · 1 citation
Biochemistry, Genetics and Molecular Biology · #RNA regulation and disease #Genetics and Neurodevelopmental Disorders #CRISPR and Genetic Engineering

paper · pdf · doi:10.1084/jem.20231725

openalex publication_date 2024/07/18 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

Inherited deficiency of the RNA lariat-debranching enzyme 1 (DBR1) is a rare etiology of brainstem viral encephalitis. The cellular basis of disease and the range of viral predisposition are unclear. We report inherited DBR1 deficiency in a 14-year-old boy who suffered from isolated SARS-CoV-2 brainstem encephalitis. The patient is homozygous for a previously reported hypomorphic and pathogenic DBR1 variant (I120T). Consistently, DBR1 I120T/I120T fibroblasts from affected individuals from this and another unrelated kindred have similarly low levels of DBR1 protein and high levels of RNA lariats. DBR1 I120T/I120T human pluripotent stem cell (hPSC)-derived hindbrain neurons are highly susceptible to SARS-CoV-2 infection. Exogenous WT DBR1 expression in DBR1 I120T/I120T fibroblasts and hindbrain neurons rescued the RNA lariat accumulation phenotype. Moreover, expression of exogenous RNA lariats, mimicking DBR1 deficiency, increased the susceptibility of WT hindbrain neurons to SARS-CoV-2 infection. Inborn errors of DBR1 impair hindbrain neuron-intrinsic antiviral immunity, predisposing to viral infections of the brainstem, including that by SARS-CoV-2.

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