PICRUSt2 for prediction of metagenome functions
2020/06/01 by Gavin M. Douglas, Vincent J. Maffei, Jesse R. Zaneveld +6 · 46 citations
Biochemistry, Genetics and Molecular Biology · #Gut microbiota and health #Metabolomics and Mass Spectrometry Studies #Microbial Metabolic Engineering and Bioproduction
paper · doi:10.1038/s41587-020-0548-6
crossref issued 2020/06/01 · crossref published 2020/06/01 · crossref published-online 2020/06/01 · crossref published-print 2020/06/01 · openalex publication_date 2020/06/01 · crossref created 2020/06/01 · crossref deposited 2023/05/20 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/29 · crossref indexed 2026/07/30
Cited by
- Toxic metals impact gut microbiota and metabolic risk in five African-origin populations
- Microbial functional guilds and genes are key to explaining soil nutrient cycling alongside soil and plant variables
- Estropausal gut microbiota transplant improves measures of ovarian function in adult mice
- Gill-associated microbiome as indicators of population stress and condition in Eastern Baltic Cod
- The combined influence of microbiome and soil environment contributes to the chemotype differentiation in Atractylodes lancea
- Non-antibiotic drugs break colonization resistance against pathogenic Gammaproteobacteria
- Nitrification CouplesMicrobial CO2 Fixationto Warming and Drought Responses in Alpine Grassland Soils
- Depletion of gut microbiota induces skeletal muscle atrophy by FXR-FGF15/19 signalling
- A non-lethal method for the sampling of the gut microbiota in Betta splendens
- Applying flukeprint environmental DNA to detect skin-associated bacteria from free-ranging West Coast Transient killer whales Orcinus orca rectipinnus
- Land use and plant genotype modulate rhizosheath traits, root-associated microbiota, and soil carbon sequestration potential
- Hotspots of enzyme activities reflect micro-scale heterogeneity in nutrient mobilization in paddy soils
- From air to insight: the evolution of airborne DNA sequencing technologies
- Co-occurrence network and predicted functions of bacterial community in soil from Brazilian Cerrado under distinct types of vegetation cover
- Early gut microbial and metabolic dysregulation with subclinical cardiac alterations in a nonhuman primate model of Rett syndrome
- Pea and canola enrich distinct rhizosphere bacterial communities even under intercropping
- Investigating microbiota differences across chronic pancreatitis, influenced by lifestyle and genetic determinants
- Comparative analysis on rhizosphere microorganisms of Cynodon dactylon (Poaceae) from the natural restoration area and eco-restoration engineering area in water-level-fluctuation zone of Jinsha River-type reservoirs, China
- Vadose Zone Geochemical Heterogeneity Governs Vertical Microbial Assembly in Lakeshore Agricultural Lands
- The dawn of the revolution that will allow us to precisely describe how microbiomes function
- The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis
- Rhizochemistry and soil bacterial community are tailored to natural stress gradients
- Microbiome turnover during offspring development varies with maternal care, but not moult, in a hemimetabolous insect
- Tissue-Specific Endophytic Microbiome Responses to ‘ Candidatus Liberibacter Asiaticus’ in Two Citrus Cultivars
- Multi-omics analysis reveals the critical role of gut microbiota related tryptophan and glutathione metabolism in sepsis-associated encephalopathy
- ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation
- Diet chemistry and cross-kingdom microbiota associate with black soldier fly larvae performance on regional side streams
- Coupled Phylogenetic and Functional Enrichment in the Tomato Rhizosphere Microbiome
- Effect of sweeteners and sweetness enhancers on weight management and gut microbiota composition in individuals with overweight or obesity: the SWEET study
- Insights into plant-microbe interactions in urban rhizosphere: feedback from Quercus cerris L. root morphology, soil zymography, and microbial community composition in rhizobox system
- Native and invasive raccoon populations host distinct microbiomes that may facilitate invasion
- Oral microbiota signatures in obesity with or without acanthosis nigricans in a Chinese cohort
- Environmentally dependent interactions shape patterns in gene content across natural microbiomes
- Comparison of the bacterial microbiome in the pharynx and nasal cavity of persistent, intermittent carriers and non-carriers of Staphylococcus aureus
- Distinct gut and oral microbiome patterns associated with dyslexia in a family-based cohort: A preliminary exploratory study
- IGFBP3 repression driven by inflammation links air pollution to placental and developmental defects
- Fused Lasso Improves Accuracy of Co-occurrence Network Inference in Grouped Samples
- Metabolic pathways profiling of aerobiomes in the Earth’s lower atmosphere
- Unlocking the Secrets of Saline Lakes: How Environmental and Microbial Interactions Shape Protodolomite Formation
- Oral supplementation with sesaminol, a sesame-related lignan, ameliorates ethanol-induced dysbiosis of the gut microbiota and increases the gut luminal short-chain fatty acid concentrations of mice
- The gut microbiome without any plant food? A case study on the gut microbiome of a healthy carnivore
- Bad company? The pericardium microbiome in people investigated for tuberculous pericarditis in an HIV-prevalent setting
- Microenvironments of black-tip reef sharks (Carcharhinus melanopterus) provide niche habitats for distinct bacterial communities
- Bacillus : driver of functional states in synthetic plant root bacterial communities
- Medication‐resistant epilepsy is associated with a unique gut microbiota signature
- Biochar-mediated microbial interactions enhance start-up of anaerobic digestion for high-strength wastewater