Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
2018/04/24 by Andrew Rambaut, Alexei J. Drummond, Alexei J Drummond +4 · 548 citations
Biochemistry, Genetics and Molecular Biology · Earth and Planetary Sciences · #Evolution and Paleontology Studies #Genetic diversity and population structure #Genomics and Phylogenetic Studies
paper · pdf · doi:10.1093/sysbio/syy032
openalex publication_date 2018/04/24 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/30
Abstract
Bayesian inference of phylogeny using Markov chain Monte Carlo (MCMC) plays a central role in understanding evolutionary history from molecular sequence data. Visualizing and analyzing the MCMC-generated samples from the posterior distribution is a key step in any non-trivial Bayesian inference. We present the software package Tracer (version 1.7) for visualizing and analyzing the MCMC trace files generated through Bayesian phylogenetic inference. Tracer provides kernel density estimation, multivariate visualization, demographic trajectory reconstruction, conditional posterior distribution summary, and more. Tracer is open-source and available at http://beast.community/tracer.
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- Evolution and spread of Xanthomonas citri subsp. citri in the São Paulo, Brazil, citrus belt inferred from 758 novel genomes
- Phylogenomics recovers multiple origins of portable case making in caddisflies (Insecta: Trichoptera), nature’s underwater architects
- First isolation of the Sindbis virus in mosquitoes from southwestern Spain reveals a new recent introduction from Africa
- Mitogenomic analysis of a late Pleistocene jaguar from North America
- Genomic analysis of wolves from Pakistan clarifies boundaries among three divergent wolf lineages
- Bayesian analyses indicate bivalves did not drive the downfall of brachiopods following the Permian-Triassic mass extinction
- Estimating the dwarfing rate of an extinct Sicilian elephant
- Sizing up phylogenetic testing in geometric morphometrics: a case study of allometry
- Genomic survey of the ex situ Palm Cockatoo (Probosciger aterrimus) population identifies an undiscovered species-level lineage endemic to Yapen Island
- A deep dive into the fossil record of diving beetles (Coleoptera: Dytiscidae): Bayesian inferences elucidate their origin and pulsed diversification at the genus level
- Etiology and Epidemiology of Branch Dieback and Fruit Blight and Necrosis of English Walnut in France
- Integrative taxonomic revision of Uropsilus (Uropsilinae, Talpidae) combining genomic, morphological and geographic evidence
- Large-scale mitogenome analysis reveals complex maternal genetic connections between Sino-Tibetan- and Altaic-speaking populations
- Testing cohesive selective paths and evaluating loss of evolutionary information while delimiting species of Brazilian wandering spiders
- The Copepoda mitogenome as a dynamic evolutionary landscape
- Tracing the Origin of Xylella fastidiosa subspecies pauca ST53 Strains in France
- Contributions to the phylogeny and phylogeography of Myotis capaccinii (Bonaparte, 1837) (Chordata, Mammalia, Chiroptera, Vespertilionidae), inferred with Cytochrome-b
- Evolutionary genomics of a natural Wolbachia superinfection in the dengue mosquito Aedes albopictus
- Re-assessment of the taxonomy of Antarctic mushrooms from King George Island, Antarctica
- Distribution, temperature, and trophic position as ecological drivers of body morphological divergence in cephalopods
- Mitochondrial genomes resolve phylogenetic conflicts and lineage-specific adaptive dynamics in Ophiuroidea: insights from deep-sea lineages
- Integrative taxonomy of the Praomys tullbergi complex (Rodentia, Muridae): a new species from West Africa
- Rediscovery of “Gloeocystis-Halbflechte” after 84 years revealed an independent lineage of ascomycetes harboured in gelatinous algal biofilms
- Dispersal, adaptation and persistence of H5N1 in the sub-Antarctic and Antarctica
- A comprehensive analysis of the SARS-CoV-2 omicron variant in Tocantins State, Brazil, and tracing the spread of the XBB.1.18.1 lineage
- Phylogenomic insights into the first multicellular streptophyte
- Unilocus delimitation methods reveal the underestimated species diversity of Thomasomys (Rodentia, Cricetidae)
- Phylogenomic Analyses Reveal that Panguiarchaeum Is a Clade of Genome-Reduced Asgard Archaea Within the Njordarchaeia
- But the Clock, Tick-Tock: An Empirical Case Study Highlights the Preeminence of Relaxed Clock Models in Total-Evidence Dating
- A new member of an entirely Anatolian clade of the Horatiinae D.W. Taylor, 1966, Hydrobiidae W. Stimpson, 1865
- Drainage-structuring of ancestral variation and a common functional pathway shape limited genomic convergence in natural high- and low-predation guppies
- Phylogenomic insights into the relationship and the evolutionary history of planthoppers (Insecta: Hemiptera: Fulgoromorpha)
- Explaining extreme differences in species richness among co-occurring palm clades in Madagascar
- Going deep: phylogenomic analyses incorporating museomic data reveal divergence and character evolution in Decapodiformes (Mollusca: Cephalopoda)
- Diversity in an ancient lake: taxonomic and phylogenetic insights from eight new freshwater snail species (Triculinae: Pomatiopsidae) of Lake Fuxian, Southwest China
- A new Chinese dicynodont and the frequent dispersal of tetrapods between Northern and Southern Pangaea during the late Permian
- The Palaeozoic assembly of the holocephalan body plan far preceded post-Cretaceous radiations into the ocean depths
- Evolution of bioluminescence in Anthozoa with emphasis on Octocorallia
- Utility of various genome lengths in diversity and evolution analyses of Hepatitis E virus
- Evolutionary history of soil-feeding Neotropical termites reveals recent divergences linked to geologic-climatic influences
- The origin and diversification of Amaryllidaceae: A phylogenetic and biogeographic analysis
- Multiple Domestication Centers of the Indian Pig Population
- Out‐of‐Africa: Origin of the Disjunct Distribution of Paleotropical Eneopterinae Crickets (Gryllidae, Xenogryllini)
- Adaptive radiation and social evolution of the ants
- Evolutionary dynamics of 1,976 lymphoid malignancies predict clinical outcome
- Cryptic species and taxonomic revision of kangaroo mice, the rodent genus Microdipodops
- The Large Carpenter Bees (Xylocopa, Apidae) of the Neotropical Region: Phylogenetics, Classification and Biogeography
- A new species of Rhinophis Hemprich, 1820 (Squamata, Uropeltidae) from Siruvani Hills, Western Ghats, India
- First comprehensive higher level phylogeny of Zygaenidae (Lepidoptera) including estimated ages of the major lineages and a review of known zygaenid fossils
- Substantial genetic divergence and lack of recent gene flow support cryptic speciation in a colour polymorphic bumble bee ( Bombus bifarius ) species complex
- Revising dating estimates and the antiquity of eusociality in termites using the fossilized birth–death process
- Diversification in Caucasian Epeorus ( Caucasiron ) mayflies (Ephemeroptera: Heptageniidae) follows topographic deformation along the Greater Caucasus range
- Redescriptions have consequences: biogeographic and conservation insights from the redescription of a widespread freshwater amphipod (Amphipoda, Gammaridae)
- WaveSeekerNet: accurate prediction of influenza A virus subtypes and host source using attention-based deep learning
- Mitogenomic analysis reveals two cryptic lineages and provides insights into the historical biogeography of the genus Pseudohynobius (Caudata, Hynobiidae)
- A new Dichocarpum W.T.Wang & P.K.Hsiao (Ranunculaceae) species from Guizhou, China
- Evidence linking life‐form to a major shift in diversification rate in Crassula
- An integrative analysis and account of two new species of Dugesia (Platyhelminthes, Tricladida, Dugesiidae) from the Hengduan Mountains, southwest China, with reflections on the historical biogeography of Eastern Palearctic/Oriental lineages
- Genome analyses suggest recent speciation and postglacial isolation in the Norwegian lemming
- Differential plastome diversification of the Lauraceae between tropical regions of Asia and America
- Renomaera patricki gen. et sp. nov. (Amphipoda, Hadzioidea, Maeridae) described from the seamount in the western Pacific, with a test of monophyly of Maeridae Krapp-Schickel, 2008
- New species and phylogenetic insights into Cosmetocleithrum (Dactylogyridae) from thorny catfishes (Doradidae), based on morphology and molecular data
- Phylogenetic classification of poorly known Crassignatha spiders (Araneae, Symphytognathidae), with descriptions of four new species
- Redescription and systematics of Oligodon ornatus Van Denburgh, 1909, and two enigmatic related species (Squamata, Colubridae)
- Unveiling hidden gonodactylid diversity in the South China Sea provides insights into non-monophyly of Gonodactylellus (Crustacea, Stomatopoda, Gonodactylidae)
- Description of a new species of the Asian newt genus Tylototriton Anderson, 1871 (Urodela, Salamandridae) from central China
- Diversification and spatio-temporal evolution of Cladoniaceae (Lecanorales, Ascomycota), a widespread family of lichen-forming fungi
- Comparative performance of viral landscape phylogeography approaches
- The selection of rapid prototyping processes based on feature extraction from STL models
- Infinite Mixture Models for Improved Modeling of Across-Site Evolutionary Variation
- A new species and a newly recorded species of the genus Hua (Gastropoda: Semisulcospiridae) from the Chishui River, Yunnan, China
- Markov-modulated continuous-time Markov chains to identify site- and branch-specific evolutionary variation
- A new large-sized lepetid limpet from the abyssal northwestern Pacific is the deepest known patellogastropod
- Chromosomal rearrangements: tempo and mode of karyotype evolution in Scarabaeoidea
- A new species of Alticola (Mammalia, Rodentia, Arvicolinae) from southern Tibet, China
- ‘Dispersification’ of Agalinis (Orobanchaceae) into South America is associated with hummingbird pollination and perennial life history shifts
- The genetic diversity of Indonesian cattle has been shaped by multiple introductions and adaptive introgression
- Evolutionary history of the snooks: Phylogeny, biogeography and diversification of the genus Centropomus
- Split or spread - A spatio-temporal framework for the evolution of annual Arabis (Brassicaceae) in Eurasia
- Placing very long branch taxa in the plant tree of life: a case study with Dioscoreales mycoheterotrophs
- Key environmental factors determining life history strategies of river fishes and their historical changes in the Yangtze River
- Phylogenetic and morphological data support a new combination for a grass endemic to Madagascar and nearby islands: Trichanthecium ambositrense (Poaceae)
- Evolution of Crematogaster sordidula (Hymenoptera, Formicidae) Ants in the Mediterranean Region During Plio‐Pleistocene Climatic Changes
- A new extremophile species of Pseudocandona (Crustacea, Ostracoda) from a sulfidic cave in Albania
- A new family of the order Monstrilloida (Copepoda) from deep waters of the North Atlantic supported by morphological and genetic evidence
- Navigating Sampling Bias in Discrete Phylogeographic Analysis: Assessing the Performance of an Adjusted Bayes Factor
- A new species of the genus Typhlomys Milne-Edwards, 1877 (Rodentia, Platacanthomyidae) from Fanjing Mountain, Guizhou, China
- Two new dioecious species of Vanguerieae (Rubiaceae) from limestone regions in Madagascar
- An unexpected discovery of hidden diversity: a new species of the genus Calamaria H. Boie in F. Boie, 1827 (Squamata, Calamariidae) from Guangxi, China
- Integrative taxonomy uncovers hidden diversity in Romanian Geophilus Leach, 1814 (Geophilomorpha, Geophilidae)
- Molecular and morphological evidence supports transferring Sacosperma (Rubiaceae, Rubioideae) from Spermacoceae to Knoxieae
- Taxonomic revision and molecular phylogeny of Pisa (Decapoda: Majoidea: Epialtidae), including the description of a new genus of Pisinae
- Phenotypic crypticity despite strong phylogenetic divergence: diversification dynamics in a species complex of Arabian Pristurus geckos
- Identity of the enigmatic oyster Saccostrea cuccullata (Bivalvia: Ostreidae)
- Revisiting the taxonomy and biogeography of the largest sigmodontine rodent (Rodentia, Cricetidae) through ancient DNA
- Endemism and hidden diversity of Habrophlebia, Eaton, 1881 in Algeria’s Northeastern Mountains (Ephemeroptera, Leptophlebiidae)
- Phylogeny and Climate Change–Driven Distribution Dynamics of Keteleeria
- Genomic and phenotypic divergence informs translocation strategies for an endangered freshwater fish
- New Crepidotus (Agaricales, Crepidotaceae) findings in China: Crepidotus cinereofuscus sp. nov. and record of C. stenocystis
- Phylogeny and chromosomal differentiation in Cestreae (Solanaceae)
- Moina heilongjiangensis sp. nov. (Crustacea, Cladocera) from the northeast of China
- Exceptional diversification of floral form in a specialized orchid pollination system
- Epipyxis fenheensis sp. nov., a new species of the genus Epipyxis (Chrysophyceae)
- Discordance between biological and genetic traits highlights complex evolutionary history in the False Apollo, Archon apollinus (Herbst, 1798) (Lepidoptera, Papilionidae, Parnassiinae)
- Relationships of a new fossorial Microcambevinae catfish species from southern Brazil supporting multiple dorsal-fin losses in Listrura (Siluriformes, Trichomycteridae)
- New records of the colonial chrysophyte Urostipulosphaera articulata (Chrysophyceae, Ochromonadales) in China
- Isolation, Phylogenetic Inferences, and Early Diversification of Xylella fastidiosa subsp. fastidiosa in Cova da Beira Region, Portugal
- Remarkably High Repeat Content in the Genomes of Sparrows: The Importance of Genome Assembly Completeness for Transposable Element Discovery
- The radiation of Hymenoptera illuminated by Bayesian inferences from the fossil record
- Seeing through the hedge: Phylogenomics of Thuja (Cupressaceae) reveals prominent incomplete lineage sorting and ancient introgression for Tertiary relict flora.
- First 3D reconstruction of the male genitalia of a Cretaceous fossil cricket: Diving into the evolutionary history of the Oecanthidae family (Orthoptera: Grylloidea) with the incorporation of new fossils in its phylogeny and a total‐evidence dating approach
- Speciation Genomics in the Tiger Whiptail Lizards ( Aspidoscelis tigris Complex)
- A new family of ant-associated fungi in Chaetothyriales
- A new freshwater species of Gnorimosphaeroma (Crustacea, Isopoda, Sphaeromatidae) from Chichi-jima Island, Ogasawara Islands, Japan
- Genome degradation results in nested symbiosis and endosymbiont replacement in cicadas
- A new species ofPhysaloptera(Nematoda: Spirurida) fromProechimys gardneri(Rodentia: Echimyidae) from the Amazon rainforest and molecular phylogenetic analyses of the genus
- Fusarium: more than a node or a foot-shaped basal cell
- The Ganoderma curtisii lineage (Basidiomycota, Polyporaceae) in the Neotropics: Ganoderma mexicurtisii sp. nov. from pine-oak forests in Mexico
- The emergence and demise of giant sloths
- Hydrographic basins dictate the genetic structure of the paradoxical frog Pseudis bolbodactyla (Anura: Hylidae) in the rivers of Central Brazil
- An integrative re-evaluation of the Fusarium sambucinum species complex
- Turrihoratia n. gen. (Caenogastropoda: Hydrobiidae) – habitat shift reflects the shift in shell morphology?
- Exploiting Viral DNA Genomes to Explore the Dispersal History of African Swine Fever Genotype II Lineages in Europe
- Scale dependent niche conservatism in fish communities of the largest freshwater lake in China
- Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil
- Rediscovery of the critically endangered Hill's horseshoe bat (Rhinolophus hilli) and other new records of bat species in Rwanda
- Range-wide mitochondrial phylogeography of Sorex monticola: evolutionarily distinct clades occupy divergent abiotic niches
- Palliocystidium, a new genus in the family Hydnodontaceae (Trechisporales)
- Challenge accepted: Evolutionary lineages versus taxonomic classification of North American shrub willows (Salix)
- Cryptic Diversity and Impacts of Domestication in the Black Soldier Fly ( Hermetia illucens ) Genome
- Gradients do grow on trees: a linear-time \cal O\hspace-0.2em( N )-dimensional gradient for statistical phylogenetics
- Hymenidium pilosum (Apiaceae) is a synonym of H. apiolens based on morphology and molecular data
- Revisiting the molecular circumscription of Sladeniaceae sensu lato (Ericales): Insights from phylogenetic discordance
- Accelerated Mitochondrial Genome Evolution in Parasitic Barnacles Driven by Adaptive and Non-adaptive Responses
- Synonymy of Pachyarthron compressum (Corallinaceae, Rhodophyta) with Corallina officinalis and proposal for Corallina officinalis subsp. cretacea
- Chloroplast phylogenomics and character evolution of eastern Asian Astragalus (Leguminosae): Tackling the phylogenetic structure of the largest genus of flowering plants in Asia
- Estudio de las medidas cautelares personales en el código de procedimiento penal ecuatoriano
- Phylogenomic relationships and historical biogeography in the South American vegetable ivory palms (Phytelepheae)
- Phylogenomics reveal extensive phylogenetic discordances in Diospyros (Ebenaceae) of China
- Origin of obligate dim-light foraging in nomiine sweat bees (Halictidae: Nomiinae), with the description of a new species of Mellitidia
- Ten new species of Leucoagaricus and Leucocoprinus from Beijing: Revealing rich diversity in temperate regions
- Phylogeography of Microphis retzii (Bleeker, 1856) and Microphis brachyurus (Bleeker, 1854) in the Pacific
- A phylogenetic perspective on the evolution of early hominin foot morphology
- Integrated analysis of fossils and molecular divergence time estimates a latest Jurassic origin of angiosperms
- Phylogenomics establishes an Early Miocene reconstruction of reef vertebrate diversity
- Spiroplasma Display an Intricate Continuum of Infection Heterogeneity and Persistence in Myrmica Ants
- Diversification and differentiation of Stipa species shed light on the regional evolutionary history of the eastern Eurasian steppe
- Integrative taxonomy of two new peltospirid gastropods from Mid-Atlantic Ridge hot vents, including a potentially symbiotic species
- Phylogenomic and morphological evidence supports the reinstatement of the bamboo genus Clavinodum from Oligostachyum (Poaceae: Bambusoideae)
- Weak Nuclear Divergence Despite Pronounced Mitochondrial Divergence Within a Widespread Desert‐Inhabiting Palearctic Lark (Aves: Alaudidae)
- Phylogeny and divergence times of the African and Malagasy Podocarpus (Podocarpaceae) and their taxonomic and biogeographic implications
- Genetic Population Structure and Distribution of the Small Giant Clam Tridacna maxima in Indo‐Pacific Coral Reefs: History Dynamics, Present Status and Future Trends
- East Asia–eastern North America disjunction revisited: Possible westward colonization route via the Western Palearctic in Carex sect. Paniceae (Cyperaceae)
- Phylogenetic relationships versus environmental impacts on the distribution and traits of Laureae (Lauraceae) species within and outside karst tiankengs
- Distribution and phylogenetic relationships of the Mexican large-toothed shrew Sorex macrodon
- ‘More tight-less tight’ Patterns in the Climatic Niche Evolution of Gymnocalycium (Cactaceae): Were Pleistocene Glaciations a Prelude?
- The origin and morphological character evolution of the paleotropical woody bamboos
- Non-adaptive Radiation Promotes Phenotypic Diversification and Convergent Evolution of Aposematic Mimicry in a Highly Diverse Genus of Megaloptera
- On Anguillosyllis cf. hessleri Maciolek, 2020 – A species complex from the Clarion-Clipperton zone, abyssal central Pacific
- Out of Africa: Phylogenomics and biogeography of Tribe Euphorbieae (Euphorbiaceae)
- Mitogenomics provide insights into the tribe‐level systematics and historical phylogeography of band‐winged grasshoppers (Orthoptera: Acrididae: Oedipodinae)
- New mid‐Cretaceous macrothelids showing a similar living mode to extant Macrothelidae (Araneae: Mygalomorphae)
- Genome assembly of Astatotilapia latifasciata uncovers B chromosome–linked chromatin reorganization
- A new dentition-based phylogeny of Litopterna (Mammalia: Placentalia) and ‘archaic’ South American ungulates
- Revision ofCerinomyces(Dacrymycetes,Basidiomycota) with notes on morphologically and historically related taxa
- Assessment of genomic diversity within and between two cryptic shiners, the West Texas shiner (Notropis megalops) and the Texas shiner (Notropis amabilis)
- Revalidation of Enteromius karkensis (Gilchrist and Thompson 1913) (Cypriniformes: Smiliogastrinae) from the southern temperate freshwater ecoregion, South Africa
- A 5,000-year-old hunter-gatherer already plagued by Yersinia pestis
- When One Global Invasion Hides Another—Cryptic Interspecific Invasion in Freshwater Gastropods
- Population structure and evolutionary history of the greater cane rat (Thryonomys swinderianus) from the Guinean Forests of West Africa
- Mitochondrial DNA patterns describe the evolutionary history of the bonnethead shark Sphyrna tiburo (Linneus 1758) complex in the western Atlantic Ocean
- Ancient viral genomes reveal introduction of human pathogenic viruses into Mexico during the transatlantic slave trade
- Validity of <i>Diderma microsporum</i> (Myxomycetes) as an independent species supported by morphological and phylogenetic analyses
- Phylogeny and historical biogeography analysis support Caucasian and Mediterranean centres of origin of key holoparasitic Orobancheae (Orobanchaceae) lineages
- Evolution of Large Eyes in Stromboidea (Gastropoda): Impact of Photic Environment and Life History Traits
- Unveiling hidden diversity: Phylogenomics of neotomine rodents and taxonomic implications for the genus Peromyscus
- The global spread of Oriental Horses in the past 1,500 years through the lens of the Y chromosome
- Reconstruction of ancient microbial genomes from the human gut
- Routes of importation and spatial dynamics of SARS-CoV-2 variants during localized interventions in Chile
- Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae)
- Next-generation phylogeography reveals unanticipated population history and climate and human impacts on the endangered floodplain bitterling (Acheilognathus longipinnis)
- A Late Devonian coelacanth reconfigures actinistian phylogeny, disparity, and evolutionary dynamics
- High‐intensity light promotes adaptive divergence of photosynthetic traits between sun‐exposed and shaded populations in Saxifraga fortunei
- Phylogenetic assessment within a species complex of a subterranean rodent (Geomys bursarius) with conservation implications for isolated subspecies
- RNA virus diversity and prevalence in field and laboratory populations of melon fly throughout its distribution
- Phylogeographic analyses of an endemic Neotropical fox (Lycalopex vetulus) reveal evidence of hybridization with a different canid species (L. gymnocercus)
- Schnabelia jiuzhaigouensis (Lamiaceae, Ajugoideae), a new species from Sichuan, China
- Comparative analysis of 326 chloroplast genomes in Chinese jujube ( Ziziphus jujuba ): Structural variations, horizontal gene transfer events, and evolutionary patterns impacting its domestication from wild jujube
- A taxonomic revision of Aureobasidium (Saccotheciaceae, Dothideales) with new species, new names, and typifications
- Dispersal across Wallace's Line: A case study in Endiandra
- Out of the Mediterranean Region: Worldwide biogeography of snapdragons and relatives (tribe Antirrhineae, Plantaginaceae)
- Compositionally Constrained Sites Drive Long-Branch Attraction
- Phylogenomics, Origin, and Diversification of Anthozoans (Phylum Cnidaria)
- A 14,000-year-old genome sheds light on the evolution and extinction of a Pleistocene vulture
- Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia
- Mitogenomics of historical type specimens of Australasian turtles: clarification of taxonomic confusion and old mitochondrial introgression
- An early dog from southeast Alaska supports a coastal route for the first dog migration into the Americas
- Cryptic diversity of limestone karst inhabiting land snails (Cyclophorus spp.) in northern Vietnam, their evolutionary history and the description of four new species
- Hidden diversity in the Brazilian Atlantic rainforest: the discovery of Jurasaidae, a new beetle family (Coleoptera, Elateroidea) with neotenic females
- A molecular phylogeny of the gastropod family Haminoeidae sensu lato (Heterobranchia: Cephalaspidea): a generic revision
- A High-quality Reference Genome and Tissue Expression Atlas for the European Lobster (Homarus gammarus).
- The fossil record of spiders revisited: implications for calibrating trees and evidence for a major faunal turnover since the Mesozoic
- Putting keyhole limpets on the map: phylogeny and biogeography of the globally distributed marine family Fissurellidae (Vetigastropoda, Mollusca)
- Dinastridium verrucosum Baumeister from Bavaria (Germany) is a Borghiellacean Dinophyte (†Suessiales)
- The family Epimetopidae (Coleoptera: Hydrophiloidea): review of current knowledge, genus-level phylogeny, and taxonomic revision of Eupotemus
- Unraveling unique island colonization events in Elachistocleis frogs: phylogeography, cryptic divergence, and taxonomical implications
- Evolution of reproductive strategies in the species-rich land snail subfamily Phaedusinae (Stylommatophora: Clausiliidae)
- A revision of pipistrelle-like bats (Mammalia: Chiroptera: Vespertilionidae) in East Africa with the description of new genera and species
- A new genus of vespertilionid bat: the end of a long journey for Joffre’s Pipistrelle (Chiroptera: Vespertilionidae)
- Untangling cryptic diversity in the High Andes: Revision of the Scytalopus [magellanicus] complex (Rhinocryptidae) in Peru reveals three new species
- High cryptic diversity in the kleptoparasitic genus Hyalorisia Dall, 1889 (Littorinimorpha: Capulidae) with the description of nine new species from the Indo-West Pacific
- Evolutionary history of Sundaland shrews (Eulipotyphla: Soricidae:Crocidura) with a focus on Borneo
- Ancient Divergence Driven by Geographic Isolation and Ecological Adaptation in Forest Dependent Sundaland Tree Squirrels
- Phylogenetic relationships among subclades within the Trinity bristle snail species complex, riverine barriers, and re-classification
- Morphology and phylogeny of scalopine moles (Eulipotyphla: Talpidae: Scalopini) from the eastern Himalayas, with descriptions of a new genus and species
- Insights into the evolutionary and demographic history of the extant endemic rodents of the Galápagos Islands
- Large-scale evolution of body temperatures in land vertebrates
- One species, two developmental modes: a case of geographic poecilogony in marine gastropods
- What should we call the Levant mole? Unravelling the systematics and demography of Talpa levantis Thomas, 1906 sensu lato (Mammalia: Talpidae)
- Integrative taxonomy, biogeography and conservation of freshwater mussels (Unionidae) in Russia
- Sorryatlanticus, you are not my type: molecular assessment splitsZophoscolex(Lumbricidae: Crassiclitellata) into French and Iberian genera
- Snails in depth: integrative taxonomy of Famelica, Glaciotomella and Rimosodaphnella (Conoidea: Raphitomidae) from the deep sea of temperate Australia
- Phylogeography of Agathistoma (Turbinidae, Tegulinae) snails in tropical and southwestern Atlantic
- A global phylogeny of the deep-sea gastropod family Scaphandridae (Heterobranchia: Cephalaspidea): Redefinition and generic classification
- The multicausal twilight of South American native mammalian predators (Metatheria, Sparassodonta)
- Deep Downunder: Integrative taxonomy of Austrobela , Spergo , Theta and Austrotheta (Gastropoda: Conoidea: Raphitomidae) from the deep sea of Australia
- Another stripe on the tiger makes no difference? Unexpected diversity in the widespread tiger tarantula Davus pentaloris (Araneae: Theraphosidae: Theraphosinae)
- Molecular phylogeny and trait evolution of Madeiran land snails: radiation of the Geomitrini (Stylommatophora: Helicoidea: Geomitridae)
- Innovatiocaris , a complete radiodont from the early Cambrian Chengjiang Lagerstätte and its implications for the phylogeny of Radiodonta
- Purple haze: Cryptic purple sequestrate Cortinarius in New Zealand
- The genomic history and global expansion of domestic donkeys
- Parallel Evolution of Bacteroidota as Long-Term Endosymbionts of Insects
- Integrative systematics of the genus Dondice Marcus, 1958 (Gastropoda, Nudibranchia, Myrrhinidae) in the Western Atlantic
- A new species of Astronotus (Teleostei, Cichlidae) from the Orinoco River and Gulf of Paria basins, northern South America
- Origin and diffusion of human Y chromosome haplogroup J1-M267
- Phylogeny, biogeography and classification of Teletisoptera (Blattaria: Isoptera)
- Geographic isolation and human-assisted dispersal in land snails: a Mediterranean story ofHelix borealisand its relatives (Gastropoda: Stylommatophora: Helicidae)
- The origins and spread of domestic horses from the Western Eurasian steppes
- Large‐scale mitogenome sequencing reveals consecutive expansions of domestic taurine cattle and supports sporadic aurochs introgression
- Nitrogen-fixing bacteria and Oxalis – evidence for a vertically inherited bacterial symbiosis
- Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
- Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet
- Phylogenomics, introgression, and demographic history of South American true toads (Rhinella)
- Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil
- Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
- Distinct Patterns of Emergence of SARS-CoV-2 Spike Variants including N501Y in Clinical Samples in Columbus Ohio
- Genomic Characterization of a Novel SARS-CoV-2 Lineage from Rio de Janeiro, Brazil
- Africa’s oldest dinosaurs reveal early suppression of dinosaur distribution
- A new family of diprotodontian marsupials from the latest Oligocene of Australia and the evolution of wombats, koalas, and their relatives (Vombatiformes)
- A comparative approach for species delimitation based on multiple methods of multi-locus DNA sequence analysis: A case study of the genus Giraffa (Mammalia, Cetartiodactyla)
- Old wild wolves: ancient DNA survey unveils population dynamics in Late Pleistocene and Holocene Italian remains
- Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)
- Phylogeny based on ultra-conserved elements clarifies the evolution of rails and allies (Ralloidea) and is the basis for a revised classification
- Basal Anseriformes from the Early Paleogene of North America and Europe
- Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements
- Substitution Rate Variation in a Robust Procellariiform Seabird Phylogeny is not Solely Explained by Body Mass, Flight Efficiency, Population Size or Life History Traits
- Origins and genetic legacy of prehistoric dogs
- Integrative taxonomy of a monopisthocotylan (Platyhelminthes, Neodermata) parasite from the gills of Doras higuchii Sabaj Pérez & Birindelli (Siluriformes, Doradidae) from the Xingú River Basin, Pará, Brazil
- Enigmatic dinosaur precursors bridge the gap to the origin of Pterosauria
- Early cephalopod evolution clarified through Bayesian phylogenetic inference
- Total evidence phylogeny of platyrrhine primates and a comparison of undated and tip-dating approaches
- Ancient Mitogenomes Suggest Stable Mitochondrial Clades of the Siberian Roe Deer
- An early nimravid from California and the rise of hypercarnivorous mammals after the middle Eocene climatic optimum
- Brawn before brains in placental mammals after the end-Cretaceous extinction
- Phylogenomics and species delimitation of the economically important Black Basses (Micropterus)
- Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand
- The problematic Cambrian arthropod Tuzoia and the origin of mandibulates revisited
- Evidence for Pleistocene gene flow through the ice-free corridor from extinct horses and camels from Natural Trap Cave, Wyoming
- Lions and brown bears colonized North America in multiple synchronous waves of dispersal across the Bering Land Bridge
- Not that young: combining plastid phylogenomic, plate tectonic and fossil evidence indicates a Palaeogene diversification of Cycadaceae
- A comprehensive phylogeny and taxonomic evaluation of the waxbills (Aves: Estrildidae)
- Novel Polyomaviruses in Mammals from Multiple Orders and Reassessment of Polyomavirus Evolution and Taxonomy
- A 2-million-year-old ecosystem in Greenland uncovered by environmental DNA
- Clarifying Recent Adaptive Diversification of the Chrysanthemum-Group on the Basis of an Updated Multilocus Phylogeny of Subtribe Artemisiinae (Asteraceae: Anthemideae)
- Genomic impact of severe population decline in a nomadic songbird
- Measles virus and rinderpest virus divergence dated to the sixth century BCE
- Global Biodiversity Patterns of the Photobionts Associated with the Genus Cladonia (Lecanorales, Ascomycota)
- Reliable placement of beetle fossils via phylogenetic analyses – Triassic Leehermania as a case study (Staphylinidae or Myxophaga?)
- Exceptionally preserved beetles in a Triassic coprolite of putative dinosauriform origin
- Integrated genomic and fossil evidence illuminates life’s early evolution and eukaryote origin
- Morphological and Genetic Divergence within the Phymaturus payuniae Clade (Iguania: Liolaemidae), with the Description of Two New Species
- A New Genus of Oak Gall Wasp, Striatoandricus Pujade-Villar (Hymenoptera: Cynipidae: Cynipini) from America with Descriptions of Two New Mexican Species.
- Phylogenomic Reconstruction of the Neotropical Poison Frogs (Dendrobatidae) and Their Conservation
- Bataspis crux , a galeaspid (jawless stem gnathostome) from the Lochkovian of Yunnan with a batwing‐shaped head adapted for hydrodynamic efficiency
- Amphipods from the Wallaby-Zenith Fracture Zone, Indian Ocean: new genus and two new species identified by integrative taxonomy
- Boring Bivalves: Using Molecular Phylogenetics to Resolve Species Identities in Botula (Mytilidae)
- Ancient mitogenomics elucidates diversity of extinct West Indian tortoises
- Molecular phylogeny and biogeography of Ecklonia spp. (Laminariales, Phaeophyceae) in Japan revealed taxonomic revision of E. kurome and E. stolonifera
- Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
- Systematics of the Giant Sedges of Carex Sect. Rhynchocystis (Cyperaceae) in Macaronesia with Description of Two New Species
- Phylogenetic Relationships Within Tribe Hibisceae (Malvaceae) Reveal Complex Patterns of Polyphyly inHibiscusandPavonia
- A new lineage of fresh‐ and brackish‐water mussels (Bivalvia, Mytilidae) from Southeast Asia
- An early Cambrian euarthropod with radiodont-like raptorial appendages
- Mitochondrial genomes and thousands of ultraconserved elements resolve the taxonomy and historical biogeography of the Euphonia and Chlorophonia finches (Passeriformes: Fringillidae)
- Molecular phylogenetic analysis sheds light on the diversity and evolutionary history of the Neotropical and African Triplophyllum (Tectariaceae)
- Nutrient acquisition-related traits converge in Arcellinida (Lobosea, Amoebozoa) evolution
- Azadinium fusiforme, a new species of Amphidomataceae from Korean and Japanese coastal waters that lacks azaspiracid production
- Hidden Species Diversity was Explored in Two Genera of Catapyrenioid Lichens (Verrucariaceae, Ascomycota) from the Deserts of China
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