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MicroCT for developmental biology: A versatile tool for high‐contrast 3D imaging at histological resolutions

2009/02/22 by Brian D. Metscher, Brian Metscher · 3 citations
Biochemistry, Genetics and Molecular Biology · Medicine · Physics and Astronomy · #Advanced X-ray Imaging Techniques #Molecular Biology Techniques and Applications #Pediatric Urology and Nephrology Studies

paper · pdf · doi:10.1002/dvdy.21857

openalex publication_date 2009/02/22 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/30

Abstract

Understanding developmental processes requires accurate visualization and parameterization of three-dimensional embryos. Tomographic imaging methods offer automatically aligned and calibrated volumetric images, but the usefulness of X-ray CT imaging for developmental biology has been limited by the low inherent contrast of embryonic tissues. Here, I demonstrate simple staining methods that allow high-contrast imaging of embryonic tissues at histological resolutions using a commercial microCT system. Quantitative comparisons of images of chick embryos treated with different contrast agents show that three very simple methods using inorganic iodine and phosphotungstic acid produce overall contrast and differential tissue contrast for X-ray imaging at least as high as that obtained with osmium. The stains can be used after any common fixation and after storage in aqueous or alcoholic media, and on a wide variety of species. These methods establish microCT imaging as a useful tool for comparative developmental studies, embryo phenotyping, and quantitative modeling of development.

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