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Fundamental and practical aspects of machine learning for the peak picking of biomolecular NMR spectra

2022/04/07 by Dawei Li, Da-Wei Li, Alexandar L. Hansen +4
Biochemistry, Genetics and Molecular Biology · Computer Science · Medicine · #Metabolomics and Mass Spectrometry Studies #Time Series Analysis and Forecasting #Traditional Chinese Medicine Studies

paper · pdf · doi:10.1007/s10858-022-00393-1

openalex publication_date 2022/04/07 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/31

Abstract

Rapid progress in machine learning offers new opportunities for the automated analysis of multidimensional NMR spectra ranging from protein NMR to metabolomics applications. Most recently, it has been demonstrated how deep neural networks (DNN) designed for spectral peak picking are capable of deconvoluting highly crowded NMR spectra rivaling the facilities of human experts. Superior DNN-based peak picking is one of a series of critical steps during NMR spectral processing, analysis, and interpretation where machine learning is expected to have a major impact. In this perspective, we lay out some of the unique strengths as well as challenges of machine learning approaches in this new era of automated NMR spectral analysis. Such a discussion seems timely and should help define common goals for the NMR community, the sharing of software tools, standardization of protocols, and calibrate expectations. It will also help prepare for an NMR future where machine learning and artificial intelligence tools will be common place.

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