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Generative Model for Synthesizing Ionizable Lipids: A Monte Carlo Tree Search Approach

2024/12/01 by Jingyi Zhao, Yuxuan Ou, Zhao, Jingyi +7
Engineering · #Process Optimization and Integration

paper · pdf · doi:10.48550/arxiv.2412.00807

Abstract

Ionizable lipids are essential in developing lipid nanoparticles (LNPs) for effective messenger RNA (mRNA) delivery. While traditional methods for designing new ionizable lipids are typically time-consuming, deep generative models have emerged as a powerful solution, significantly accelerating the molecular discovery process. However, a practical challenge arises as the molecular structures generated can often be difficult or infeasible to synthesize. This project explores Monte Carlo tree search (MCTS)-based generative models for synthesizable ionizable lipids. Leveraging a synthetically accessible lipid building block dataset and two specialized predictors to guide the search through chemical space, we introduce a policy network guided MCTS generative model capable of producing new ionizable lipids with available synthesis pathways.

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