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An optimal-control framework for reaction diffusion systems with application to synthetic developmental biology

2025/09/19 by Ouchdiri, Mohamed Amine, Faquir, Hamza, Benjelloun, Saad +3
#FOS: Mathematics #Optimization and Control (math.OC)

paper · doi:10.48550/arxiv.2509.15889

Abstract

Reaction-diffusion systems offer a powerful framework for understanding self-organized patterns in biological systems, yet controlling these patterns remains a significant challenge. As a consequence, we present a rigorous framework of optimal control for a class of coupled reaction-diffusion systems. The couplings are justified by the shared regulatory mechanisms encountered in synthetic biology. Furthermore, we introduce inputs and polynomial input-gain functions to guarantee well-posedness of the control system while maintaining biological relevance. As a result, we formulate an optimal control problem and derive necessary optimality conditions. We demonstrate our framework on an instance of such equations modeling the Nodal-Lefty interactions in mammalian cells. Numerical simulations showcase the effectiveness in directing pattern towards diverse targeted ones.

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