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A fast and rigorous numerical tool to measure length-scale artifacts in molecular simulations

2025/11/03 by Benedikt M. Reible, Nils Liebreich, Reible, Benedikt M. +5 · 1 citation
Biochemistry, Genetics and Molecular Biology · Chemistry · Physics and Astronomy · #Protein Structure and Dynamics #Advanced Physical and Chemical Molecular Interactions #Advanced Chemical Physics Studies

paper · pdf · doi:10.48550/arxiv.2511.01442

Abstract

The two-sided Bogoliubov inequality for classical and quantum many-body systems is a theorem that provides rigorous bounds on the free-energy cost of partitioning a given system into two or more independent subsystems. This theorem motivates the definition of a quality factor which directly quantifies the degree of statistical-mechanical consistency achieved by a given simulation box size. A major technical merit of the theorem is that, for systems with two-body interactions and a known radial distribution function, the quality factor can be computed by evaluating just two six-dimensional integrals. In this work, we present a numerical algorithm for computing the quality factor and demonstrate its consistency with respect to results in the literature obtained from simulations performed at different box sizes.

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