2025/12/23 by Prasoon Saurabh, Saurabh, Prasoon
Chemistry · Physics and Astronomy · #Synthesis and Properties of Aromatic Compounds #Quantum chaos and dynamical systems #Advanced Chemical Physics Studies
paper · doi:10.48550/arxiv.2512.20414
The rigorous description of Conical Intersections (CIs) remains the central challenge of non-adiabatic quantum chemistry. While the ``Yarkony Seam'' -- the (3N-8)-dimensional manifold of degeneracy -- is well-understood geometrically, its accurate characterization by high-level electronic structure methods is plagued by numerical instabilities. Specifically, standard Coupled Cluster (CC) theory suffers from root bifurcations near Ground State CIs, rendering the ``Gold Standard'' of chemistry inapplicable where it is needed most. Here, we present QuMorpheus, an open-source computational package that resolves these singularities by implementing a topological framework based on Dissipative Mixed Hodge Modules (DMHM) [P. Saurabh, arXiv:2512.19487 (2025)]. By algorithmically mapping the CC polynomial equations to a spectral sheaf, we compute the exact Monodromy (μ) invariants of the intersection. We demonstrate that this automated algebraic geometry approach correctly identifies the physical ground state topology in the Köhn-Tajti model and resolves the intersection seams of realistic chemical systems, including Ethylene and the Chloronium ion (H2Cl+). Furthermore, we apply QuMorpheus to the photoisomerization of Previtamin D, proving that the experimentally observed Woodward-Hoffmann selection rules are a direct consequence of a topological ``Monodromy Wall'' (μ=1, γ=π) rather than purely energetic barriers. This establishes a general software solution to the ``Yarkony Problem,'' enabling the robust, automated mapping of global intersection seams in complex molecular systems. The topological stability of these intersections allows for the control protocols discussed in Ref.[P. Saurabh, Submitted to Phys. Rev. X (2025)].