2023/08/21 by Niloufar Fuladi, Fuladi, Niloufar, Alfredo Hubard +3
Agricultural and Biological Sciences · Biochemistry, Genetics and Molecular Biology · #Banana Cultivation and Research #Chromosomal and Genetic Variations #Combinatorics (math.CO) #Computational Geometry (cs.CG) #FOS: Computer and information sciences #FOS: Mathematics #Genome Rearrangement Algorithms
paper · pdf · doi:10.48550/arxiv.2308.10666
openalex publication_date 2023/08/21 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28
Given a graph drawn in the plane, the degenerate crossing number of the drawing is the number of points in the plane which are contained in the relative interior of at least two edges, where each edge is required to be drawn as a simple arc. The degenerate crossing number of a graph is the minimum degenerate crossing number among all its drawings. Given a drawing, cutting a neighborhood of the surface around each crossing and pasting a Möbius band gives a non-orientable surface, on which the drawing of the graph can be extended to an embedding. From this observation, Mohar derived that the degenerate crossing number of a graph is at most its non-orientable genus, and conjectured that these quantities are equal for every graph. He also made a stronger conjecture for loopless pseudo-triangulations with a fixed embedding scheme. In this paper, we prove a structure theorem that allows to understand when the degenerate crossing number and non-orientable genus coincide in a large class of loopless bipartite embedding schemes. In particular, we provide a counterexample to Mohar's stronger conjecture, but show that in the vast majority of the 2-vertex cases, as well as for many bipartite graphs, Mohar's conjecture is satisfied. The reversal distance between two signed permutations is the minimum number of reversals that transform one permutation to the other one. If we represent the trajectory of each element of a signed permutation under successive reversals by a simple arc, we obtain a drawing of a 2-vertex embedding scheme with degenerate crossings. Our main result is proved by leveraging this connection and a classical result in genome rearrangement (the Hannenhalli--Pevzner algorithm) and can also be understood as an extension of this algorithm when the reversals do not necessarily happen in a monotone order.