2022/04/23 by Tamal K. Dey, Tao Hou, Dey, Tamal K. +1 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algebraic Topology (math.AT) #Cell Image Analysis Techniques #Computational Geometry (cs.CG) #FOS: Computer and information sciences #FOS: Mathematics #Topological and Geometric Data Analysis
paper · pdf · doi:10.48550/arxiv.2204.11080
openalex publication_date 2022/04/23 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28
Zigzag persistence is a powerful extension of the standard persistence which allows deletions of simplices besides insertions. However, computing zigzag persistence usually takes considerably more time than the standard persistence. We propose an algorithm called FastZigzag which narrows this efficiency gap. Our main result is that an input simplex-wise zigzag filtration can be converted to a cell-wise non-zigzag filtration of a Δ-complex with the same length, where the cells are copies of the input simplices. This conversion step in FastZigzag incurs very little cost. Furthermore, the barcode of the original filtration can be easily read from the barcode of the new cell-wise filtration because the conversion embodies a series of diamond switches known in topological data analysis. This seemingly simple observation opens up the vast possibilities for improving the computation of zigzag persistence because any efficient algorithm/software for standard persistence can now be applied to computing zigzag persistence. Our experiment shows that this indeed achieves substantial performance gain over the existing state-of-the-art softwares.