2013/03/16 by J. C. Phillips, Phillips, J. C.
Biochemistry, Genetics and Molecular Biology · Medicine · #Biomolecules (q-bio.BM) #FOS: Biological sciences #Influenza Virus Research Studies #Monoclonal and Polyclonal Antibodies Research #Populations and Evolution (q-bio.PE) #Protein Structure and Dynamics
paper · pdf · doi:10.48550/arxiv.1303.4383
openalex publication_date 2013/03/16 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28
Hemagglutinin (HA) and neuraminidase (NA) are highly variable envelope glycoproteins. Here hydropathic analysis, previously applied to quantify common flu (H1N1) evolution (1934-), is applied to the evolution of less common but more virulent (avian derived) H3N2 (1968-), beginning with N2. Whereas N1 exhibited opposing migration and vaccination pressures, the dominant N2 trend is due to vaccination, with only secondary migration interactions. Separation and evaluation of these effects is made possible by the use of two distinct hydropathic scales representing first-order and second-order thermodynamic interactions. The evolutions of H1 and H3 are more complex, with larger competing migration and vaccination effects. The linkages of H3 and N2 evolutionary trends are examined on two modular length scales, medium (glycosidic) and large (corresponding to sialic acid interactions). The hierarchical hydropathic results complement and greatly extend advanced phylogenetic results obtained from similarity studies. They exhibit simple quantitative trends that can be transferred to engineer oncolytic properties of other viral proteins to treat recalcitrant cancers.