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Life in Silico - Simulation of Complex Systems by Enzymatic Computation

2000/11/09 by G. Mack, Gerhard Mack, Mack, Gerhard +2
Biochemistry, Genetics and Molecular Biology · Physics and Astronomy · #Biological Physics (physics.bio-ph) #Computational Physics (physics.comp-ph) #FOS: Physical sciences #Gene Regulatory Network Analysis #Microbial Metabolic Engineering and Bioproduction #Origins and Evolution of Life #physics.bio-ph #physics.comp-ph

paper · pdf · doi:10.48550/arxiv.physics/0011020

35 pages, 8 figures

arxiv created 2000/11/09 · openalex publication_date 2000/11/09 · arxiv updated 2009/12/01 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

We describe software and a language for quasibiological computations. Its theoretical basis is a unified theory of complex (adaptive) systems where all laws are regularities of relations between things or agents, and dynamics is made from ``atomic constituents'' called enzymes.The notion is abstracted from biochemistry. The software can be used to simulate physical systems as well as basic life processes. Systems can be constructed and manipulated by mouse click and there is an automatic translation of all operations into a LISP-like scripting language, so that one may compose code by mouse click.

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