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Hierarchical stochastic neighbor embedding as a tool for visualizing the encoding capability of magnetic resonance fingerprinting dictionaries

2019/10/07 by Kirsten Koolstra, Koolstra, Kirsten, Peter Börnert +7 · 1 citation
Computer Science · Medicine · #Advanced MRI Techniques and Applications #Advanced Neuroimaging Techniques and Applications #Blind Source Separation Techniques #Computer Vision and Pattern Recognition (cs.CV) #FOS: Computer and information sciences #FOS: Electrical engineering #Image and Video Processing (eess.IV) #electronic engineering #information engineering

paper · pdf · doi:10.48550/arxiv.1910.02696

openalex publication_date 2019/10/07 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

In Magnetic Resonance Fingerprinting (MRF) the quality of the estimated parameter maps depends on the encoding capability of the variable flip angle train. In this work we show how the dimensionality reduction technique Hierarchical Stochastic Neighbor Embedding (HSNE) can be used to obtain insight into the encoding capability of different MRF sequences. Embedding high-dimensional MRF dictionaries into a lower-dimensional space and visualizing them with colors, being a surrogate for location in low-dimensional space, provides a comprehensive overview of particular dictionaries and, in addition, enables comparison of different sequences. Dictionaries for various sequences and sequence lengths were compared to each other, and the effect of transmit field variations on the encoding capability was assessed. Clear differences in encoding capability were observed between different sequences, and HSNE results accurately reflect those obtained from an MRF matching simulation.

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