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Efficient Wrapper Feature Selection using Autoencoder and Model Based Elimination

2019/05/28 by Sharan Ramjee, Ramjee, Sharan, Aly El Gamal +1 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #Artificial Intelligence (cs.AI) #FOS: Computer and information sciences #Face and Expression Recognition #Machine Learning (cs.LG) #Machine Learning (stat.ML) #Machine Learning and Data Classification #Machine Learning in Bioinformatics

paper · pdf · doi:10.48550/arxiv.1905.11592

openalex publication_date 2019/05/28 · openalex created_date 2025/10/10 · openalex updated_date 2026/07/28

Abstract

We propose a computationally efficient wrapper feature selection method - called Autoencoder and Model Based Elimination of features using Relevance and Redundancy scores (AMBER) - that uses a single ranker model along with autoencoders to perform greedy backward elimination of features. The ranker model is used to prioritize the removal of features that are not critical to the classification task, while the autoencoders are used to prioritize the elimination of correlated features. We demonstrate the superior feature selection ability of AMBER on 4 well known datasets corresponding to different domain applications via comparing the classification accuracies with other computationally efficient state-of-the-art feature selection techniques. Interestingly, we find that the ranker model that is used for feature selection does not necessarily have to be the same as the final classifier that is trained on the selected features. Finally, we note how a smaller number of features can lead to higher accuracies on some datasets, and hypothesize that overfitting the ranker model on the training set facilitates the selection of more salient features.

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