Langmead, Ben
- Prefix-Free Parsing for Building Big BWTs
2018/03/29 by Boucher, Christina, Gagie, Travis, Kuhnle, Alan +3 · 7 citations
#Data Structures and Algorithms (cs.DS) #FOS: Computer and information sciences
- PHONI: Streamed Matching Statistics with Multi-Genome References
2020/11/11 by Boucher, Christina, Gagie, Travis, I, Tomohiro +6 · 4 citations
#Data Structures and Algorithms (cs.DS) #FOS: Computer and information sciences
- Efficient Construction of a Complete Index for Pan-Genomics Read\n Alignment
2018/11/16 by Alan Kuhnle, Kuhnle, Alan, Taher Mun +9 · 3 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Data Structures and Algorithms (cs.DS) #FOS: Computer and information sciences #Genomics and Chromatin Dynamics #Genomics and Phylogenetic Studies
- Suffixient Sets
2023/12/03 by Lore Depuydt, Travis Gagie, Depuydt, Lore +7 · 1 voice · 3 citations
Computer Science · #Data Structures and Algorithms (cs.DS) #FOS: Computer and information sciences #cs.DS
- Matching reads to many genomes with the r-index
2019/08/04 by Taher Mun, Mun, Taher, Alan Kuhnle +9 · 1 citation
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Data Structures and Algorithms (cs.DS) #FOS: Biological sciences #FOS: Computer and information sciences #Genomics (q-bio.GN) #Genomics and Phylogenetic Studies #RNA and protein synthesis mechanisms
- KATKA: A KRAKEN-like tool with k given at query time
2022/06/13 by Travis Gagie, Sana Kashgouli, Gagie, Travis +3 · 2 citations
Biochemistry, Genetics and Molecular Biology · Computer Science · #Algorithms and Data Compression #Biochemical and Structural Characterization #Data Structures and Algorithms (cs.DS) #FOS: Computer and information sciences #Genomics and Phylogenetic Studies